STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_08778Diaminopimelate decarboxylase chloroplastic-like. (500 aa)    
Predicted Functional Partners:
Rsub_03273
Diaminopimelate epimerase.
  
 0.982
Rsub_01310
Aspartokinase; Belongs to the aspartokinase family.
   
 0.957
Rsub_07267
Aspartate-semialdehyde dehydrogenase.
  
 
 0.757
Rsub_00167
Spermine synthase.
  
 0.672
Rsub_11988
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 0.672
Rsub_06261
Uncharacterized protein.
    
  0.633
Rsub_03574
Aminotran_1_2 domain-containing protein.
  
 
 0.632
Rsub_12781
LL-diaminopimelate aminotransferase.
  
 
 0.632
Rsub_05111
Delta-1-pyrroline-5-carboxylate synthase A.
     
 0.611
Rsub_02643
Argininosuccinate synthase.
  
 
 0.603
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.