STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_09825Uncharacterized protein. (301 aa)    
Predicted Functional Partners:
Rsub_07608
Uncharacterized protein.
    
 0.750
Rsub_03698
Uncharacterized protein.
   
 0.719
Rsub_06069
Ion_trans domain-containing protein.
    
 0.598
Rsub_09862
4F5 domain-containing protein.
   
 0.535
Rsub_08771
Ubiquitin-40S ribosomal protein S27a.
   
  0.519
Rsub_09717
Uncharacterized protein.
   
  0.519
Rsub_05223
Intraflagellar transport particle.
   
 0.501
Rsub_12019
C3H1-type domain-containing protein.
   
 0.501
Rsub_12022
Uncharacterized protein.
  
     0.500
Rsub_01063
Uncharacterized protein.
    
  0.483
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.