STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_11393RRM domain-containing protein. (337 aa)    
Predicted Functional Partners:
Rsub_04774
Splicing factor 3B subunit 2.
   
 0.964
Rsub_01357
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.963
Rsub_02690
Splicing factor 3B subunit 1.
    
 0.961
Rsub_07709
Splicing factor 3A subunit 2.
   
 0.960
Rsub_09426
PHD finger-like domain-containing 5A.
    
 0.949
Rsub_08601
Splicing factor 3A subunit 3.
    
 0.947
Rsub_02386
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.938
Rsub_01946
P-loop containing nucleoside triphosphate hydrolase.
    
 0.933
Rsub_06737
U2 small nuclear ribonucleoprotein B.
   
 0.933
Rsub_00764
Small nuclear ribonucleoprotein G.
    
 0.931
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.