STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_10818Ubiquitin conjugation factor E4-like. (1011 aa)    
Predicted Functional Partners:
Rsub_10353
HECT domain-containing protein.
   
 0.997
Rsub_02455
Ubiquitin conjugation factor E4.
   
0.982
Rsub_07295
Uncharacterized protein.
   
 0.982
Rsub_10270
Uncharacterized protein.
   
 0.957
Rsub_07948
Uncharacterized protein.
   
 0.956
Rsub_04862
UN_NPL4 domain-containing protein.
    
 
 0.955
Rsub_05239
UBX domain-containing protein.
    
 
 0.924
Rsub_07134
Ubiquitin fusion degradation.
    
 
 0.924
Rsub_01857
Uncharacterized protein.
    
 
 0.922
Rsub_09217
Ubiquitin thioesterase.
    
 
 0.912
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.