STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_12209HMG box domain-containing protein. (99 aa)    
Predicted Functional Partners:
Rsub_02600
Uncharacterized protein; Belongs to the actin family.
    
 0.613
Rsub_12707
Uncharacterized protein; Belongs to the actin family.
    
 0.595
Rsub_04757
YL1_C domain-containing protein.
    
 0.584
Rsub_09488
Histone H2A; Belongs to the histone H2A family.
   
 0.579
Rsub_06540
RNA polymerase II transcription factor B subunit-like.
    
 0.559
Rsub_07972
DNA repair helicase-like.
   
 0.556
Rsub_01916
General transcription factor IIH subunit.
    
 0.554
Rsub_05603
Uncharacterized protein.
    
 0.551
Rsub_04526
RuvB-like helicase.
    
 0.541
Rsub_04527
RuvB-like helicase.
    
 0.541
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.