STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_12546Uncharacterized protein. (578 aa)    
Predicted Functional Partners:
Rsub_08646
Serine arginine-rich splicing factor-like.
  
 
 0.626
Rsub_07709
Splicing factor 3A subunit 2.
    
 
 0.600
Rsub_10618
Serine arginine-rich splicing factor.
  
 
 0.557
Rsub_00750
Uncharacterized protein.
   
 
 0.543
Rsub_10013
Splicing factor 3B subunit 6.
  
 
  0.516
Rsub_07594
Splicing factor U2af small subunit B-like.
   
 0.514
Rsub_06780
Nuclear cap-binding protein subunit 2.
    
0.498
Rsub_00627
Nuclear cap-binding subunit 1.
    
 0.488
Rsub_09529
Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.
    
 0.484
Rsub_13073
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.484
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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