STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_11938Uncharacterized protein. (320 aa)    
Predicted Functional Partners:
Rsub_02434
Uncharacterized protein.
  
 
 0.832
Rsub_03845
Uncharacterized protein.
  
 
 0.767
Rsub_07937
Meckelin.
  
  
 0.758
Rsub_03980
Uncharacterized protein.
  
 
 
 0.720
Rsub_02339
Uncharacterized protein.
   
 
 0.696
Rsub_01030
Transmembrane protein.
  
  
 0.671
Rsub_06131
CC2D2AN-C2 domain-containing protein.
    
 
 0.611
Rsub_07216
Ig-like domain-containing protein.
    
 
 0.597
Rsub_05526
Uncharacterized protein.
      
 0.548
Rsub_07983
DUF1619 domain-containing protein.
  
 
 
 0.474
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.