STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_12579Peptidase M1 family. (507 aa)    
Predicted Functional Partners:
Rsub_12580
Peptidase_M1 domain-containing protein.
 
     0.952
Rsub_00120
Aspartate aminotransferase.
   
 0.939
Rsub_02480
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.939
Rsub_02428
Aspartate aminotransferase.
   
 0.939
Rsub_06615
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.939
Rsub_06441
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.939
Rsub_07967
Aspartate aminotransferase.
   
 0.939
Rsub_05760
Uncharacterized protein.
   
 0.938
Rsub_07907
Glutamate--cysteine ligase; Belongs to the carboxylate-amine ligase family. Glutamate--cysteine ligase type 2 subfamily.
   
 0.934
Rsub_11209
Leucine aminopeptidase-like.
   
 0.934
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.