STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_13182Pseudouridine synthase. (249 aa)    
Predicted Functional Partners:
Rsub_09178
SAP domain-containing protein.
  
 
 0.614
Rsub_12987
TRUD domain-containing protein.
    
 
 0.606
Rsub_03132
SpoU_methylase domain-containing protein.
  
 
 0.570
Rsub_04877
G domain-containing protein.
   
 
 0.541
Rsub_00921
Mitochondrial ribosomal protein L21.
   
   0.539
Rsub_02810
50S ribosomal protein L21.
   
   0.539
Rsub_04572
50S ribosomal protein, chloroplastic; Belongs to the universal ribosomal protein uL24 family.
   
   0.539
Rsub_06228
50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.539
Rsub_07761
50S ribosomal protein chloroplastic; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.539
Rsub_01294
Uncharacterized protein.
    
 
 0.528
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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