STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_13020Chromatin-remodeling complex ATPase chain. (282 aa)    
Predicted Functional Partners:
Rsub_02776
Uncharacterized protein.
 
 
 0.963
Rsub_07226
Chromatin-remodeling complex ATPase chain.
 
      0.900
Rsub_07736
ATP-dependent DNA helicase.
 
 
    0.900
Rsub_05902
Uncharacterized protein.
 
      0.892
Rsub_01530
P-loop containing nucleoside triphosphate hydrolase.
   
 0.737
Rsub_01801
SNF2 family DNA-dependent ATPase.
 
  
   0.714
Rsub_10093
DNA repair and recombination protein RAD54B.
 
 
   0.703
Rsub_01522
Histone H2B; Belongs to the histone H2B family.
   
 0.691
Rsub_07239
HMG box domain-containing protein.
   
 0.676
Rsub_01523
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.666
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.