STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rsub_12069WW domain-containing protein. (518 aa)    
Predicted Functional Partners:
Rsub_12721
Exosome complex component-like.
   
  0.517
Rsub_07330
mRNA-decapping enzyme subunit.
     
 0.482
Rsub_12323
Exosome complex component.
   
 
  0.478
Rsub_08290
Exosome complex component.
   
 
  0.474
Rsub_07089
Exosome complex exonuclease.
     
 0.472
Rsub_00233
Poly(A)-specific ribonuclease.
    
 0.431
Rsub_08225
Uncharacterized protein.
    
 0.431
Rsub_10140
Poly(A)-specific ribonuclease.
    
 0.431
Your Current Organism:
Raphidocelis subcapitata
NCBI taxonomy Id: 307507
Other names: Kirchneriella subcapitata, R. subcapitata
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.