STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_9456Decapping and exoribonuclease isoform X4. (1043 aa)    
Predicted Functional Partners:
C2E21_0799
Exosome complex component RRP42.
   
   0.925
C2E21_5513
Regulation of nuclear pre-mRNA domain-containing 1A-like.
    
 
 0.885
C2E21_9146
Glyoxylase family.
   
 
 0.837
C2E21_3802
Sorting nexin 2B.
   
 
 0.837
C2E21_3990
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor.
   
 
 0.837
C2E21_2341
5-3 exoribonuclease 1.
    
 
 0.563
C2E21_5031
Golgi apparatus membrane ECHIDNA.
    
 
 0.499
C2E21_2881
Polynucleotide 5-hydroxyl-kinase NOL9.
   
 
 0.454
C2E21_0180
Desert hedgehog.
   
   0.437
C2E21_7948
U3 small nucleolar ribonucleo IMP3.
   
 
 0.424
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.