STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_7829SNF2 family DNA-dependent ATPase. (1875 aa)    
Predicted Functional Partners:
C2E21_2931
Chromatin structure-remodeling complex SYD-like isoform X1.
  
0.819
C2E21_6248
WD repeat-containing 32.
   
 0.727
C2E21_5012
WD-40 repeat-containing MSI4-like.
   
 0.727
C2E21_4120
WD-40 repeat-containing MSI1.
   
 0.727
C2E21_9274
Methyl--binding domain 4.
    
 0.667
C2E21_0965
Methyl-binding domain 4.
    
 0.667
C2E21_0033
Histone deacetylase complex subunit SAP18 isoform A.
    
 0.643
C2E21_1215
Fanconi anemia group M isoform X3.
    
 0.603
C2E21_8606
Class I RPD3 type histone deacetylase.
   
 0.572
C2E21_7875
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.572
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.