STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_7571Ubiquitin-NEDD8 RUB2. (858 aa)    
Predicted Functional Partners:
C2E21_3058
E3 ubiquitin-ligase PRT1.
   
 0.996
C2E21_9117
Ubiquitin conjugating enzyme family.
   
 0.994
C2E21_4983
Baculoviral IAP repeat-containing 6-like.
   
 0.994
C2E21_4416
Putative ubiquitin-conjugating enzyme E2.
   
 0.994
C2E21_1215
Fanconi anemia group M isoform X3.
   
 0.985
C2E21_4869
Lipid transfer.
    
  0.981
C2E21_4788
Ubiquitin-60S ribosomal L40.
   
0.977
C2E21_0943
Ubiquitin-40S ribosomal S27a.
   
 
0.954
C2E21_7431
E3 ubiquitin-ligase UPL3-like.
   
 0.919
C2E21_8754
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.903
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.