STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_6929Carboxymethylenebutenolidase. (218 aa)    
Predicted Functional Partners:
C2E21_8698
Sterol desaturase; Belongs to the sterol desaturase family.
   
 0.525
C2E21_9254
Tocopherol cyclase.
   
 0.503
C2E21_3876
Eukaryotic translation initiation factor 2 subunit gamma-like.
   
 0.503
C2E21_6329
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
   
 0.470
C2E21_0548
C-5 sterol desaturase; Belongs to the sterol desaturase family.
   
 0.468
C2E21_0295
Pre-rRNA-processing TSR1-like protein.
   
  0.461
C2E21_7521
Multifunctional methyltransferase subunit TRM112 At1g22270.
   
 0.459
C2E21_1638
Bystin.
   
  0.456
C2E21_4759
LTV1-like protein.
   
  0.450
C2E21_7742
20S-pre-rRNA D-site endonuclease nob1-like; Belongs to the multicopper oxidase family.
   
  0.449
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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