STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_7115Transport SEC13-like protein B isoform B; Belongs to the WD repeat SEC13 family. (1820 aa)    
Predicted Functional Partners:
C2E21_8046
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.999
C2E21_7233
Transport SEC31-like protein B isoform B.
    
 0.999
C2E21_1632
Transport Sec24-like protein.
   
 0.997
C2E21_1485
Transport Sec24-like protein.
   
 0.997
C2E21_8013
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.995
C2E21_0195
COP-II coat nucleoporin; Belongs to the WD repeat SEC13 family.
    
0.994
C2E21_8010
UBA domain-containing protein.
    
 0.989
C2E21_2376
Nuclear pore complex NUP98A isoform X1 isoform C.
    
 0.986
C2E21_2300
Nuclear pore protein.
    
 0.984
C2E21_9439
Nuclear pore complex Nup155 isoform A.
    
 0.981
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.