STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_6490Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase chloroplastic. (394 aa)    
Predicted Functional Partners:
C2E21_4703
Transmembrane and coiled-coil domain-containing 1.
    
 
 0.883
C2E21_0325
Transport Sec61 subunit alpha-like; Belongs to the SecY/SEC61-alpha family.
   
 
 0.844
C2E21_7041
Transport Sec61 subunit gamma.
    
   0.770
C2E21_9118
60S ribosomal L5.
   
   0.754
C2E21_4360
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
   
   0.751
C2E21_2288
60S ribosomal L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
 
 0.746
C2E21_6615
60S ribosomal L11; Belongs to the universal ribosomal protein uL5 family.
   
   0.739
C2E21_1014
Asterix.
    
 
 0.729
C2E21_9048
60S ribosomal L18-3.
   
   0.726
C2E21_8755
60S ribosomal L30.
   
   0.726
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.