STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_4748Ubiquitin-ligase E3 A. (2039 aa)    
Predicted Functional Partners:
C2E21_2382
Ubiquitin-ligase E3.
  
  
 
0.931
C2E21_7431
E3 ubiquitin-ligase UPL3-like.
   
 
0.660
C2E21_7571
Ubiquitin-NEDD8 RUB2.
   
  0.418
C2E21_5778
40S ribosomal S27.
   
  0.418
C2E21_5475
Polyubiquitin 3 isoform B; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  0.418
C2E21_4940
Polyubiquitin.
   
  0.418
C2E21_2555
Polyubiquitin-C isoform X1.
   
  0.418
C2E21_8876
Ubiquitin-activating enzyme E1 2 isoform B; Belongs to the ubiquitin-activating E1 family.
   
 0.413
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.