STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_4605tRNA uridine 5-carboxymethylaminomethyl modification enzyme. (789 aa)    
Predicted Functional Partners:
C2E21_5164
Putative tRNA modification GTPase; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
 0.901
C2E21_2275
tRNA modification GTPase mitochondrial.
 0.901
C2E21_8679
Vacuolar sorting-associated 45-like protein; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.899
C2E21_6366
GTPase Der.
  
 0.806
C2E21_2063
Iron hydrogenase assembly.
  
 0.806
C2E21_0637
GTPase Der; Belongs to the complex I LYR family.
  
 0.806
C2E21_8733
tRNA-specific 2-thiouridylase.
  
 0.707
C2E21_7428
tRNA 2-thiouridine(34) synthase isoform A.
  
 0.707
C2E21_5316
D-aspartate oxidase.
     
 0.535
C2E21_5148
Oxidoreductase TDA3.
     
 0.535
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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