STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_4163CHROMATIN REMODELING 8. (1379 aa)    
Predicted Functional Partners:
C2E21_2502
DNA excision repair ERCC-8-like isoform A.
    
 0.942
C2E21_1746
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.942
C2E21_0338
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.936
C2E21_6110
DNA-directed RNA polymerase II subunit 4.
    
 0.931
C2E21_3546
DNA-directed RNA polymerases and III subunit RPABC2.
    
 0.912
C2E21_1442
DNA-directed RNA polymerase II subunit RPB7.
    
 0.911
C2E21_5412
DNA-directed RNA polymerases IV and V subunit 3.
    
  0.909
C2E21_4067
DNA repair UVH3 isoform X2.
   
 0.909
C2E21_9350
DNA-directed RNA polymerases and III subunit RPABC5.
    
  0.908
C2E21_3149
DNA-directed RNA polymerases II and V subunit 8A-like.
    
  0.908
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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