STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_4062Serine arginine repetitive matrix 1 isoform X1. (350 aa)    
Predicted Functional Partners:
C2E21_4108
Regulator of nonsense transcripts UPF2.
    
 
 0.943
C2E21_4978
Pre-mRNA-splicing factor CWC21.
   
 0.942
C2E21_1377
RNA-binding 25.
   
 0.938
C2E21_9551
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
  
  0.932
C2E21_6104
Pre-mRNA-processing factor 17-like isoform X1.
    
 0.932
C2E21_3739
Pre-mRNA-splicing factor CWC22-like protein isoform B.
    
 0.927
C2E21_5647
Aminoacrylate hydrolase.
    
 0.924
C2E21_3850
Pre-mRNA-processing 40C.
   
 0.901
C2E21_7451
Pre-mRNA-splicing factor SLU7.
     
 0.895
C2E21_8836
Coiled-coil domain-containing 12-like.
     
 0.893
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.