STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_3536Zinc finger CCCH domain-containing 25-like. (803 aa)    
Predicted Functional Partners:
C2E21_1429
BUD13-like protein.
   
 0.988
C2E21_8905
Cleavage and polyadenylation specificity factor CPSF30.
   
 
  0.968
C2E21_9161
PHD finger-like domain-containing 5B.
    
 
 0.963
C2E21_4487
Splicing factor 3B subunit 1.
    
 
 0.961
C2E21_0020
Splicing factor 3B subunit 2.
    
 
 0.951
C2E21_0907
Cell division cycle 5 isoform A.
    
 
 0.950
C2E21_9058
Spliceosome nuclear pre-mRNA splicing factor.
    
   0.930
C2E21_4978
Pre-mRNA-splicing factor CWC21.
   
 
 0.929
C2E21_2657
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform B.
    
 0.924
C2E21_3850
Pre-mRNA-processing 40C.
    
   0.922
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.