STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_1166Methyltransferase C9orf114. (347 aa)    
Predicted Functional Partners:
C2E21_6255
U3 small nucleolar ribonucleo IMP4.
   
  
 0.854
C2E21_4950
WD40 repeat.
   
    0.695
C2E21_6222
SGNH hydrolase.
   
   0.688
C2E21_0564
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
   0.659
C2E21_6517
Nucleolar complex 4-like protein.
   
    0.610
C2E21_3283
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
    0.590
C2E21_2259
Pre-rRNA-processing esf1.
   
   0.588
C2E21_8796
H ACA ribonucleo complex subunit 4.
  
 
 0.587
C2E21_4139
Pseudouridylate synthase transporter.
  
 
 0.587
C2E21_7974
Methyltransferase mitochondrial.
   
  
 0.584
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.