STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_0849Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. (179 aa)    
Predicted Functional Partners:
C2E21_2463
Trigger factor type chaperone family.
  
 
 0.876
C2E21_8263
50S ribosomal L27.
  
   0.802
C2E21_7369
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
   0.801
C2E21_1960
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.796
C2E21_4711
40S ribosomal S18; Belongs to the universal ribosomal protein uS13 family.
  
   0.794
C2E21_4952
50S ribosomal L19-chloroplastic.
  
   0.788
C2E21_7948
U3 small nucleolar ribonucleo IMP3.
   
   0.785
C2E21_5371
Mitochondrial ribosomal S6.
   
   0.785
C2E21_8771
40S ribosomal S5; Belongs to the universal ribosomal protein uS7 family.
   
   0.782
C2E21_6615
60S ribosomal L11; Belongs to the universal ribosomal protein uL5 family.
   
   0.782
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.