STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_0066Squamosa promoter binding. (373 aa)    
Predicted Functional Partners:
C2E21_1215
Fanconi anemia group M isoform X3.
    
 0.706
C2E21_4094
DNA polymerase delta small subunit.
    
 0.654
C2E21_2794
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.585
C2E21_5468
Small nuclear ribonucleoprotein Sm D2.
    
 0.571
C2E21_9547
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.522
C2E21_3830
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like.
   
   0.492
C2E21_7665
DNA ligase 1 isoform X1.
     
 0.490
C2E21_0291
Small nuclear ribonucleoprotein G.
    
  0.489
C2E21_0938
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B.
    
   0.479
C2E21_7602
Putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit mitochondrial.
   
   0.475
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.