STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_0366Zinc finger matrin-type 2-like. (218 aa)    
Predicted Functional Partners:
C2E21_3850
Pre-mRNA-processing 40C.
    
  0.972
C2E21_1281
SART-1 family DOT2.
    
 0.970
C2E21_4974
STABILIZED1.
   
 0.962
C2E21_0014
Thioredoxin YLS8.
    
 0.952
C2E21_6314
Sm LSM7.
   
 0.951
C2E21_3685
Patatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family.
   
 0.939
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
  0.927
C2E21_1265
116 kDa U5 small nuclear ribonucleo component-like isoform B.
   
 
 0.920
C2E21_2373
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
   0.916
C2E21_2123
U4 U6 small nuclear ribonucleo Prp31-like.
   
 0.908
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.