STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C2E21_0151Splicing factor subunit; Belongs to the SF3B5 family. (88 aa)    
Predicted Functional Partners:
C2E21_9161
PHD finger-like domain-containing 5B.
   
 0.998
C2E21_1315
Splicing factor 3B subunit 6.
   
 0.998
C2E21_4487
Splicing factor 3B subunit 1.
    
 0.997
C2E21_0020
Splicing factor 3B subunit 2.
    
 0.997
C2E21_5193
Splicing factor 3B subunit 4.
   
 0.989
C2E21_2283
Splicing factor 3B subunit 3-like.
   
 0.989
C2E21_5468
Small nuclear ribonucleoprotein Sm D2.
   
 0.988
C2E21_0244
Splicing factor 3A subunit 2.
   
 0.986
C2E21_9547
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.983
C2E21_0291
Small nuclear ribonucleoprotein G.
   
  0.983
Your Current Organism:
Chlorella sorokiniana
NCBI taxonomy Id: 3076
Other names: C. sorokiniana, Chlorella sorokiniana Shihira & R.W.Krauss, Chlorella sp. C74, Chlorella sp. GXNN 01, Chlorophyta sp. LWG002615, SAG 211-8k
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.