STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107730102Transcription factor Sox-17-alpha-A-like. (307 aa)    
Predicted Functional Partners:
LOC107743324
Homeobox protein Mix.2-like.
  
 
 0.768
LOC107726752
Homeobox protein OTX1 B-like.
   
 
 0.721
GATA5
Transcription factor GATA-5-like.
    
 0.714
LOC107747495
Transcription factor GATA-5-like.
    
 0.714
ENSSRHP00000094937
SEBOX homeobox.
     
 0.689
LOC107708517
Nodal homolog.
    
 0.623
LOC107706449
Nodal homolog 2-A-like.
    
 0.623
LOC107709668
Cryptic protein-like.
    
 0.619
LOC107727742
Cryptic protein-like.
    
 0.619
LOC107708510
GATA-binding factor 6-B-like.
    
 0.568
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.