STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mrpl2039S ribosomal protein L20, mitochondrial. (180 aa)    
Predicted Functional Partners:
LOC107752949
Large subunit ribosomal protein L35e.
   
 
 0.999
ENSSRHP00000000500
Mitochondrial ribosomal protein L17.
  
 
 0.999
LOC107716952
Large subunit ribosomal protein L5e.
   
 
 0.999
ENSSRHP00000001078
Large subunit ribosomal protein L9e.
   
 
 0.999
LOC107714600
Small subunit ribosomal protein S9e.
  
 
 0.999
ENSSRHP00000001613
annotation not available
   
 
 0.999
LOC107752362
39S ribosomal protein L1, mitochondrial-like isoform X1.
  
 
 0.999
MRPL32
39S ribosomal protein L32, mitochondrial-like.
  
 
 0.999
ENSSRHP00000002955
annotation not available
   
 
 0.999
LOC107706552
MRNA turnover protein 4 homolog.
  
 
 0.999
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.