STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107709070Protein unc-50 homolog. (259 aa)    
Predicted Functional Partners:
akap17a
Splicing factor, arginine/serine-rich 17.
      
 0.689
ENSSRHP00000015561
Yip1 interacting factor homolog A (S. cerevisiae).
      
 0.617
LOC107751949
Protein transport protein YIF1.
      
 0.617
ENSSRHP00000032174
Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like.
    
 
 0.591
ENSSRHP00000041877
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
    
 
 0.591
ARHGAP6
Rho GTPase-activating protein 6-like isoform X1.
      
 0.589
ARHGAP6-2
Rho GTPase activating protein 6.
      
 0.589
LOC107755978
Protein YIPF4-like.
   
  
 0.574
LOC107716799
UDP-glucuronic acid decarboxylase 1 isoform X1.
      
 0.572
LOC107721615
UDP-glucuronic acid decarboxylase 1-like.
      
 0.572
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.