STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107711438Homeobox protein SIX3-like. (294 aa)    
Predicted Functional Partners:
ENSSRHP00000041028
Paired box protein Pax-6 isoform X1.
   
 
 0.551
ENSSRHP00000043761
Paired box 6a.
   
 
 0.551
ENSSRHP00000054392
Orthodenticle homeobox 2b.
   
 
 0.548
LOC107732165
Homeobox protein OTX2-like.
   
 
 0.548
LOC107719453
Visual system homeobox 2.
   
  
 0.542
ENSSRHP00000079603
annotation not available
   
  
 0.542
LOC107724414
Sonic hedgehog protein A-like.
   
  
 0.533
ENSSRHP00000048795
Sonic hedgehog signaling molecule a.
   
  
 0.533
lhx2
LIM/homeobox protein Lhx2 isoform X1.
   
  
 0.531
ENSSRHP00000046057
LIM/homeobox protein Lhx2-like.
   
  
 0.531
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.