STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SATB1SATB homeobox 1. (760 aa)    
Predicted Functional Partners:
CASP6
Caspase-6-like.
    
 0.575
LOC107729569
Caspase-6-like isoform X1.
    
 0.575
sumo1
Small ubiquitin-related modifier 1.
    
 0.548
ENSSRHP00000018470
annotation not available
    
 0.548
LOC107719178
Ubiquitin-conjugating enzyme E2 I.
    
  0.514
LOC107719178-2
SUMO-conjugating enzyme UBC9-B.
    
  0.514
LOC107717705
SUMO-conjugating enzyme UBC9-B-like.
    
  0.514
LOC107747869
SUMO-conjugating enzyme UBC9-B-like.
    
  0.514
LOC107723610
SUMO-conjugating enzyme UBC9-like.
    
  0.514
ENSSRHP00000087834
annotation not available
    
  0.514
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.