STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107717750Krueppel-like factor 4 isoform X1. (424 aa)    
Predicted Functional Partners:
LOC107736873
POU domain, class 5, transcription factor 1-like isoform X1.
    
 0.764
LOC107739697
POU domain, class 5, transcription factor 1.
    
 0.764
Sox2
Transcription factor SOX2 (SOX group B).
   
 0.752
LOC107748305
Transcriptional regulator Myc-2 isoform X1.
   
 
 0.708
LOC107732914
Protein lin-28 homolog A isoform X1.
    
 0.610
ENSSRHP00000075480
Protein lin-28 homolog A-like.
    
 0.610
ENSSRHP00000025966
Estrogen-related receptor beta.
    
 0.542
ENSSRHP00000059297
Estrogen-related receptor beta.
    
 0.542
ENSSRHP00000082647
Protein lin-28 homolog A-like.
    
 0.539
ENSSRHP00000023249
Catenin beta 1.
    
 0.535
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.