STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107729102Histone H4 transcription factor-like. (503 aa)    
Predicted Functional Partners:
LOC107717065
Homeobox protein goosecoid-like.
    
   0.842
LOC107750880
Homeobox protein goosecoid.
    
   0.842
LOC107756368
Transcription initiation factor TFIID subunit 8-like isoform X1.
   
    0.624
LOC107723763
Transcription initiation factor TFIID subunit 8.
   
    0.624
LOC107725504
Leucine-rich repeat-containing protein 57.
   
    0.622
LOC107729305
Leucine-rich repeat-containing protein 57-like.
   
    0.622
ENSSRHP00000016537
Protein NPAT-like isoform X1.
    
 
 0.611
LOC107743659
Protein NPAT-like isoform X1.
    
 
 0.611
LSM10
LSM10, U7 small nuclear RNA associated.
      
 0.605
ENSSRHP00000001609
U7 snRNA-associated Sm-like protein LSm10.
      
 0.605
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.