STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107745465[histone H3]-dimethyl-L-lysine9 demethylase. (1031 aa)    
Predicted Functional Partners:
skp1
S-phase kinase associated protein 1.
    
 0.711
skp1-2
S-phase kinase-associated protein 1.
    
 0.711
ENSSRHP00000098133
annotation not available
    
 0.711
Topbp1
Topoisomerase (DNA) II binding protein 1.
    
 
 0.583
LOC107731148
Histone-lysine N-methyltransferase SUV39H1-A isoform X1.
    
 0.573
ENSSRHP00000027266
Suppressor of variegation 3-9 homolog 1b.
    
 0.573
suv39h1
[histone H3]-lysine9 N-trimethyltransferase SUV39H.
    
 0.573
LOC107707128
AT-rich interactive domain-containing protein 5B-like isoform X1.
     
 0.545
ENSSRHP00000003910
AT-rich interactive domain-containing protein 5B-like.
     
 0.545
ENSSRHP00000026931
AT-rich interactive domain-containing protein 5B-like.
     
 0.545
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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