STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107751100Protein FAM78B-like. (292 aa)    
Predicted Functional Partners:
LOC107715987
U3 small nucleolar RNA-associated protein 5.
   
 0.592
LOC107721093
WD repeat-containing protein 43-like.
   
 0.592
ENSSRHP00000087205
DEAH (Asp-Glu-Ala-His) box polypeptide 37.
    
 0.582
LOC107749295
U3 small nucleolar RNA-associated protein 4 homolog.
    
 0.558
ENSSRHP00000088447
U3 small nucleolar RNA-associated protein 4 homolog.
    
 0.558
LOC107735596
U3 small nucleolar RNA-associated protein 15 homolog.
   
 0.551
LOC107733277
U3 small nucleolar RNA-associated protein 15 homolog.
   
 0.551
Cask
Calcium/calmodulin-dependent serine protein kinase.
   
 0.548
ENSSRHP00000098875
Peripheral plasma membrane protein CASK-like.
   
 0.548
LOC107750489
U3 small nucleolar ribonucleoprotein protein MPP10-like isoform X1.
   
 0.545
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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