STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107714445Pentraxin-related protein PTX3-like. (453 aa)    
Predicted Functional Partners:
LOC107725226
Tumor necrosis factor-inducible gene 6 protein-like.
   
 
 0.801
LOC107723653
Tumor necrosis factor-inducible gene 6 protein-like.
   
 
 0.801
ENSSRHP00000052203
Selenoprotein T, 1b.
      
 0.497
LOC107710848
Thioredoxin reductase-like selenoprotein T.
      
 0.497
ENSSRHP00000031631
Alpha-1-microglobulin/bikunin precursor.
      
 0.483
ambp
Protein AMBP.
      
 0.483
ENSSRHP00000059247
Si:ch211-117c9.5.
      
 0.467
ENSSRHP00000059251
Solute carrier family 6 (neurotransmitter transporter, creatine) member 8.
      
 0.467
ENSSRHP00000063824
Si:ch211-117c9.5.
      
 0.467
ENSSRHP00000035088
Fibrinogen C domain-containing protein 1-like.
    
 
 0.438
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.