STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSRHP00000071064Retinitis pigmentosa 1-like 1 protein. (259 aa)    
Predicted Functional Partners:
ENSSRHP00000089553
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.835
c8b
Complement component 8 subunit beta.
   
 0.793
ENSSRHP00000071978
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
   
 0.790
cdc73
Parafibromin.
   
 0.790
pot1
Protection of telomeres protein 1.
    
 
 0.723
ENSSRHP00000103112
Protection of telomeres 1 homolog.
    
 
 0.723
LOC107738365
RNA polymerase-associated protein CTR9 homolog.
    
 0.711
ENSSRHP00000010509
annotation not available
    
 0.711
LOC107719456
Cyclin-dependent kinase 2-interacting protein-like.
    
 0.711
ENSSRHP00000048910
annotation not available
    
 0.711
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.