SDC3-2 protein (Sinocyclocheilus rhinocerous)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDC3-2

Syndecan-3-like. (418 aa)

Predicted Functional Partners:

LOC107748562

0.697

LOC107751894

0.697

LOC107744892

0.655

LOC107725622

0.655

LOC107723923

0.636

LOC107708113

0.636

LOC107708001

0.634

ENSSRHP00000099373

0.634

ENSSRHP00000054085

0.617

ENSSRHP00000097611

0.617

Your Current Organism:

Sinocyclocheilus rhinocerous

NCBI taxonomy Id: 307959
Other names: S. rhinocerous

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSRHP00000054085	LOC107708113	ENSSRHP00000054085	ENSSRHP00000071484	Brevican core protein-like isoform X1.	Syndecan-4-like.	0.602
ENSSRHP00000054085	LOC107723923	ENSSRHP00000054085	ENSSRHP00000016317	Brevican core protein-like isoform X1.	Syndecan-4-like.	0.602
ENSSRHP00000054085	SDC3-2	ENSSRHP00000054085	ENSSRHP00000078681	Brevican core protein-like isoform X1.	Syndecan-3-like.	0.617
ENSSRHP00000097611	LOC107708113	ENSSRHP00000097611	ENSSRHP00000071484	Brevican core protein-like isoform X1.	Syndecan-4-like.	0.602
ENSSRHP00000097611	LOC107723923	ENSSRHP00000097611	ENSSRHP00000016317	Brevican core protein-like isoform X1.	Syndecan-4-like.	0.602
ENSSRHP00000097611	SDC3-2	ENSSRHP00000097611	ENSSRHP00000078681	Brevican core protein-like isoform X1.	Syndecan-3-like.	0.617
ENSSRHP00000099373	SDC3-2	ENSSRHP00000099373	ENSSRHP00000078681	Pleiotrophin-like.	Syndecan-3-like.	0.634
LOC107708001	SDC3-2	ENSSRHP00000061022	ENSSRHP00000078681	Pleiotrophin-like isoform X1.	Syndecan-3-like.	0.634
LOC107708113	ENSSRHP00000054085	ENSSRHP00000071484	ENSSRHP00000054085	Syndecan-4-like.	Brevican core protein-like isoform X1.	0.602
LOC107708113	ENSSRHP00000097611	ENSSRHP00000071484	ENSSRHP00000097611	Syndecan-4-like.	Brevican core protein-like isoform X1.	0.602
LOC107708113	LOC107723923	ENSSRHP00000071484	ENSSRHP00000016317	Syndecan-4-like.	Syndecan-4-like.	0.900
LOC107708113	LOC107725622	ENSSRHP00000071484	ENSSRHP00000050173	Syndecan-4-like.	Decorin-like.	0.610
LOC107708113	LOC107744892	ENSSRHP00000071484	ENSSRHP00000032187	Syndecan-4-like.	Decorin-like isoform X1.	0.610
LOC107708113	LOC107748562	ENSSRHP00000071484	ENSSRHP00000023597	Syndecan-4-like.	Syndecan-2-A-like.	0.829
LOC107708113	LOC107751894	ENSSRHP00000071484	ENSSRHP00000030995	Syndecan-4-like.	Syndecan-2-A-like.	0.829
LOC107708113	SDC3-2	ENSSRHP00000071484	ENSSRHP00000078681	Syndecan-4-like.	Syndecan-3-like.	0.636
LOC107723923	ENSSRHP00000054085	ENSSRHP00000016317	ENSSRHP00000054085	Syndecan-4-like.	Brevican core protein-like isoform X1.	0.602
LOC107723923	ENSSRHP00000097611	ENSSRHP00000016317	ENSSRHP00000097611	Syndecan-4-like.	Brevican core protein-like isoform X1.	0.602
LOC107723923	LOC107708113	ENSSRHP00000016317	ENSSRHP00000071484	Syndecan-4-like.	Syndecan-4-like.	0.900
LOC107723923	LOC107725622	ENSSRHP00000016317	ENSSRHP00000050173	Syndecan-4-like.	Decorin-like.	0.610