STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107705715Ras-related protein Rab-39B-like isoform X1. (219 aa)    
Predicted Functional Partners:
ENSSRHP00000104428
Sequestosome-1-like.
    
 0.905
LOC107733782
Guanine nucleotide exchange protein C9orf72.
    
 0.682
LOC107747573
Guanine nucleotide exchange protein C9orf72.
    
 0.682
LOC107737714
Smith-Magenis syndrome chromosomal region candidate gene 8 protein homolog.
    
 0.675
ENSSRHP00000059837
Smith-Magenis syndrome chromosomal region candidate gene 8 protein homolog.
    
 0.675
ENSSRHP00000069934
Smith-Magenis syndrome chromosomal region candidate gene 8-B protein homolog.
    
 0.675
ENSSRHP00000050006
Guanine nucleotide exchange factor for Rab-3A-like isoform X1.
    
 0.631
LOC107757202
rab-3A-interacting protein-like.
    
 0.631
ENSSRHP00000057687
RAB3A interacting protein (rabin3)-like 1.
    
 0.631
ENSSRHP00000096223
RAB3A interacting protein (rabin3).
    
 0.631
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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