STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSRHP00000083104Zinc finger CCHC domain-containing protein 9-like isoform X1. (254 aa)    
Predicted Functional Partners:
LOC107720906
RNA exonuclease 4-like.
   
   0.789
LOC107752948
RNA exonuclease 4-like.
   
   0.789
ENSSRHP00000075219
IMP U3 small nucleolar ribonucleoprotein 3.
   
 
 0.651
imp3
U3 small nucleolar ribonucleoprotein protein IMP3.
   
 
 0.651
LOC107735390
RNA-binding protein NOB1-like.
   
    0.623
LOC107705795
RNA-binding protein NOB1-like.
   
    0.623
ENSSRHP00000006519
RNA binding motif protein 34.
   
 
 0.598
rbm34
RNA-binding protein 34.
   
 
 0.598
ENSSRHP00000040474
Serine and arginine rich splicing factor 6a.
   
 
 0.580
LOC107736959
Serine/arginine-rich splicing factor 6-like.
   
 
 0.580
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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