LOC107744603 protein (Sinocyclocheilus rhinocerous)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107744603

Vacuolar protein sorting-associated protein 11 homolog isoform X1. (927 aa)

Predicted Functional Partners:

ENSSRHP00000000993

0.993

LOC107705536

0.993

VPS41

0.993

ENSSRHP00000010113

0.993

LOC107706675

0.993

ENSSRHP00000082213

0.993

LOC107739368

0.993

ENSSRHP00000100406

0.993

ENSSRHP00000006032

0.986

ENSSRHP00000044222

0.986

Your Current Organism:

Sinocyclocheilus rhinocerous

NCBI taxonomy Id: 307959
Other names: S. rhinocerous

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSRHP00000000993	ENSSRHP00000006032	ENSSRHP00000000993	ENSSRHP00000006032	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	Vacuolar protein sorting-associated protein 8 homolog.	0.935
ENSSRHP00000000993	ENSSRHP00000010113	ENSSRHP00000000993	ENSSRHP00000010113	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	Vacuolar protein sorting-associated protein 41 homolog.	0.993
ENSSRHP00000000993	ENSSRHP00000044222	ENSSRHP00000000993	ENSSRHP00000044222	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	Vacuolar protein sorting-associated protein 8 homolog.	0.935
ENSSRHP00000000993	ENSSRHP00000100406	ENSSRHP00000000993	ENSSRHP00000100406	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	VPS18 core subunit of CORVET and HOPS complexes.	0.993
ENSSRHP00000000993	LOC107705536	ENSSRHP00000000993	ENSSRHP00000002922	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	Vacuolar protein sorting-associated protein 16 homolog isoform X1.	0.995
ENSSRHP00000000993	LOC107706675	ENSSRHP00000000993	ENSSRHP00000019856	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	Vacuolar protein sorting-associated protein 16 homolog.	0.995
ENSSRHP00000000993	LOC107739368	ENSSRHP00000000993	ENSSRHP00000083172	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	Vacuolar protein sorting-associated protein 18 homolog.	0.993
ENSSRHP00000000993	LOC107744603	ENSSRHP00000000993	ENSSRHP00000084802	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	Vacuolar protein sorting-associated protein 11 homolog isoform X1.	0.993
ENSSRHP00000000993	VPS41	ENSSRHP00000000993	ENSSRHP00000007260	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	Vacuolar protein sorting-associated protein 41 homolog isoform X1.	0.993
ENSSRHP00000006032	ENSSRHP00000000993	ENSSRHP00000006032	ENSSRHP00000000993	Vacuolar protein sorting-associated protein 8 homolog.	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	0.935
ENSSRHP00000006032	ENSSRHP00000010113	ENSSRHP00000006032	ENSSRHP00000010113	Vacuolar protein sorting-associated protein 8 homolog.	Vacuolar protein sorting-associated protein 41 homolog.	0.758
ENSSRHP00000006032	ENSSRHP00000082213	ENSSRHP00000006032	ENSSRHP00000082213	Vacuolar protein sorting-associated protein 8 homolog.	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	0.935
ENSSRHP00000006032	ENSSRHP00000100406	ENSSRHP00000006032	ENSSRHP00000100406	Vacuolar protein sorting-associated protein 8 homolog.	VPS18 core subunit of CORVET and HOPS complexes.	0.986
ENSSRHP00000006032	LOC107705536	ENSSRHP00000006032	ENSSRHP00000002922	Vacuolar protein sorting-associated protein 8 homolog.	Vacuolar protein sorting-associated protein 16 homolog isoform X1.	0.986
ENSSRHP00000006032	LOC107706675	ENSSRHP00000006032	ENSSRHP00000019856	Vacuolar protein sorting-associated protein 8 homolog.	Vacuolar protein sorting-associated protein 16 homolog.	0.986
ENSSRHP00000006032	LOC107739368	ENSSRHP00000006032	ENSSRHP00000083172	Vacuolar protein sorting-associated protein 8 homolog.	Vacuolar protein sorting-associated protein 18 homolog.	0.986
ENSSRHP00000006032	LOC107744603	ENSSRHP00000006032	ENSSRHP00000084802	Vacuolar protein sorting-associated protein 8 homolog.	Vacuolar protein sorting-associated protein 11 homolog isoform X1.	0.986
ENSSRHP00000006032	VPS41	ENSSRHP00000006032	ENSSRHP00000007260	Vacuolar protein sorting-associated protein 8 homolog.	Vacuolar protein sorting-associated protein 41 homolog isoform X1.	0.758
ENSSRHP00000010113	ENSSRHP00000000993	ENSSRHP00000010113	ENSSRHP00000000993	Vacuolar protein sorting-associated protein 41 homolog.	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.	0.993
ENSSRHP00000010113	ENSSRHP00000006032	ENSSRHP00000010113	ENSSRHP00000006032	Vacuolar protein sorting-associated protein 41 homolog.	Vacuolar protein sorting-associated protein 8 homolog.	0.758