STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSRHP00000085503TRNA pseudouridine(38/39) synthase-like isoform X1. (435 aa)    
Predicted Functional Partners:
ENSSRHP00000000500
Mitochondrial ribosomal protein L17.
  
  
 0.863
mrpl17
39S ribosomal protein L17, mitochondrial.
  
  
 0.863
LOC107755443
Probable tRNA pseudouridine synthase 1.
   
 0.862
ENSSRHP00000036058
Ribosomal RNA processing 1.
   
    0.857
ENSSRHP00000003600
annotation not available
  
  
 0.815
polr1c
DNA-directed RNA polymerases I and III subunit RPAC1.
  
  
 0.815
polr2c
DNA-directed RNA polymerase II subunit RPB3.
  
  
 0.815
ENSSRHP00000104687
RNA polymerase I and III subunit C.
  
  
 0.815
LOC107748892
TRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4-like.
   
 
 0.810
LOC107713721
TRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4-like.
   
 
 0.810
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.