STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107745777Leucine-rich repeat-containing protein 47-like. (565 aa)    
Predicted Functional Partners:
Farsa
Phenylalanine--tRNA ligase alpha subunit.
  
 0.996
ENSSRHP00000064723
phenylalanyl-tRNA synthetase subunit alpha.
  
 0.996
FARS2
Phenylalanine--tRNA ligase, mitochondrial.
  
 0.996
ENSSRHP00000055800
annotation not available
  
 
 0.990
ENSSRHP00000069287
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.990
LOC107724337
Tyrosine--tRNA ligase, cytoplasmic isoform X1.
  
  
 0.987
ENSSRHP00000065113
Tyrosine--tRNA ligase, cytoplasmic-like.
  
  
 0.987
LOC107754686
Small subunit ribosomal protein S13e.
  
 
 0.906
LOC107750653
Small subunit ribosomal protein S13e.
  
 
 0.906
ENSSRHP00000001060
RIO kinase 1 (yeast).
    
 
 0.905
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.