STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107738927Uncharacterized protein LOC107738927. (965 aa)    
Predicted Functional Partners:
uba52
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.828
ENSSRHP00000093444
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.828
LOC107752103
Ubiquitin-small subunit ribosomal protein S27Ae.
    
 0.822
LOC107752103-2
ubiquitin-40S ribosomal protein S27a.
    
 0.822
LOC107738134
Ubiquitin-like protein Nedd8.
   
 0.694
LOC107742272
Ubiquitin-like protein Nedd8.
   
 0.694
LOC107753928
Ubiquitin-like protein Nedd8.
   
 0.694
LOC107706317
NEDD8.
   
 0.694
ENSSRHP00000015405
Sentrin-specific protease 8-like.
    
 0.668
LOC107738916
Sentrin-specific protease 8-like.
    
 0.668
Your Current Organism:
Sinocyclocheilus rhinocerous
NCBI taxonomy Id: 307959
Other names: S. rhinocerous
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.