STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_29669Putative DDB1-and CUL4-associated factor 13. (439 aa)    
Predicted Functional Partners:
BSL78_07538
Putative U3 small nucleolar RNA-associated protein 14-like A.
   
 0.997
BSL78_20749
WD_REPEATS_REGION domain-containing protein.
   
 0.996
BSL78_20007
Putative WD repeat-containing protein 43.
   
 0.995
BSL78_13426
Putative U3 small nucleolar RNA-associated protein 18-like.
   
 0.995
BSL78_08124
Putative nucleolar protein 14.
   
 0.995
BSL78_10786
UTP15, U3 small nucleolar ribonucleoprotein.
   
  0.994
BSL78_12993
Putative nucleolar complex protein 4-like.
   
  0.993
BSL78_13545
Putative U3 small nucleolar ribonucleoprotein IMP3.
   
  0.989
BSL78_09449
Putative bystin-like.
   
 
 0.989
BSL78_18520
Putative ribosomal L1 domain-containing protein 1.
   
   0.988
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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