STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_29665Putative RNA pseudouridylate synthase domain-containing protein 3-like. (293 aa)    
Predicted Functional Partners:
BSL78_17584
Putative tRNA modification GTPase GTPBP3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 
 0.838
BSL78_05272
Uncharacterized protein.
  
 
 0.830
BSL78_01334
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.795
BSL78_17755
GTP-binding protein 8.
   
 
 0.792
BSL78_06321
Putative 39S ribosomal protein L21, mitochondrial isoform X3.
   
   0.788
BSL78_28047
Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
 
 0.783
BSL78_17240
Large subunit ribosomal protein 23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.780
BSL78_09198
Putative 39S ribosomal protein L3, mitochondrial-like; Belongs to the universal ribosomal protein uL3 family.
  
 
 0.777
BSL78_22088
Putative 39S ribosomal protein L13, mitochondrial-like.
  
   0.768
BSL78_26460
Putative 39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
  
 
 0.761
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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