STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_28840Putative transcription factor Sox-17-alpha-A-like. (203 aa)    
Predicted Functional Partners:
BSL78_12090
HMG box domain-containing protein.
    
 0.831
BSL78_17491
Catenin beta.
    
 0.736
BSL78_00402
Catenin beta.
    
 0.736
BSL78_03935
Runt protein.
   
 0.656
BSL78_00291
Putative runt-related transcription factor isoform X1.
   
 0.656
BSL78_02580
Putative SUMO-conjugating enzyme UBC9-B; Belongs to the ubiquitin-conjugating enzyme family.
    
   0.646
BSL78_17429
HMG box domain-containing protein.
  
 
0.623
BSL78_10869
Putative cAMP-dependent protein kinase catalytic subunit PRKX-like.
    
 0.622
BSL78_09619
Putative cAMP-dependent protein kinase catalytic subunit beta-like isoform X2.
    
 0.622
BSL78_03749
Putative transcription factor SOX-4-like.
  
  
0.608
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.