BSL78_27597 protein (Apostichopus japonicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BSL78_27597

MYND-type domain-containing protein. (418 aa)

Predicted Functional Partners:

BSL78_08211

0.812

BSL78_10533

0.782

BSL78_03503

0.782

BSL78_17930

0.751

BSL78_26993

0.735

BSL78_18410

0.735

BSL78_18409

0.735

BSL78_07091

0.735

BSL78_06305

0.735

BSL78_05810

0.735

Your Current Organism:

Apostichopus japonicus

NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BSL78_03503	BSL78_05810	A0A2G8LH67	A0A2G8LAN2	Putative retinoblastoma-binding protein 5 isoform X3.	Uncharacterized protein.	0.404
BSL78_03503	BSL78_06305	A0A2G8LH67	A0A2G8L956	Putative retinoblastoma-binding protein 5 isoform X3.	Putative zinc finger protein.	0.404
BSL78_03503	BSL78_07091	A0A2G8LH67	A0A2G8L6X7	Putative retinoblastoma-binding protein 5 isoform X3.	Uncharacterized protein.	0.404
BSL78_03503	BSL78_08211	A0A2G8LH67	A0A2G8L3N1	Putative retinoblastoma-binding protein 5 isoform X3.	P53.	0.408
BSL78_03503	BSL78_10533	A0A2G8LH67	A0A2G8KX74	Putative retinoblastoma-binding protein 5 isoform X3.	Putative set1/Ash2 histone methyltransferase complex subunit ASH2-like.	0.999
BSL78_03503	BSL78_18409	A0A2G8LH67	A0A2G8K9S3	Putative retinoblastoma-binding protein 5 isoform X3.	KRAB-related domain-containing protein.	0.404
BSL78_03503	BSL78_18410	A0A2G8LH67	A0A2G8K9Q8	Putative retinoblastoma-binding protein 5 isoform X3.	Prdm9.	0.404
BSL78_03503	BSL78_26993	A0A2G8LH67	A0A2G8JKD2	Putative retinoblastoma-binding protein 5 isoform X3.	Uncharacterized protein.	0.404
BSL78_03503	BSL78_27597	A0A2G8LH67	A0A2G8JIL6	Putative retinoblastoma-binding protein 5 isoform X3.	MYND-type domain-containing protein.	0.782
BSL78_05810	BSL78_03503	A0A2G8LAN2	A0A2G8LH67	Uncharacterized protein.	Putative retinoblastoma-binding protein 5 isoform X3.	0.404
BSL78_05810	BSL78_06305	A0A2G8LAN2	A0A2G8L956	Uncharacterized protein.	Putative zinc finger protein.	0.519
BSL78_05810	BSL78_07091	A0A2G8LAN2	A0A2G8L6X7	Uncharacterized protein.	Uncharacterized protein.	0.519
BSL78_05810	BSL78_08211	A0A2G8LAN2	A0A2G8L3N1	Uncharacterized protein.	P53.	0.602
BSL78_05810	BSL78_10533	A0A2G8LAN2	A0A2G8KX74	Uncharacterized protein.	Putative set1/Ash2 histone methyltransferase complex subunit ASH2-like.	0.430
BSL78_05810	BSL78_17930	A0A2G8LAN2	A0A2G8KB30	Uncharacterized protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.798
BSL78_05810	BSL78_18409	A0A2G8LAN2	A0A2G8K9S3	Uncharacterized protein.	KRAB-related domain-containing protein.	0.519
BSL78_05810	BSL78_18410	A0A2G8LAN2	A0A2G8K9Q8	Uncharacterized protein.	Prdm9.	0.519
BSL78_05810	BSL78_26993	A0A2G8LAN2	A0A2G8JKD2	Uncharacterized protein.	Uncharacterized protein.	0.519
BSL78_05810	BSL78_27597	A0A2G8LAN2	A0A2G8JIL6	Uncharacterized protein.	MYND-type domain-containing protein.	0.735
BSL78_06305	BSL78_03503	A0A2G8L956	A0A2G8LH67	Putative zinc finger protein.	Putative retinoblastoma-binding protein 5 isoform X3.	0.404