STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BSL78_25503Putative zinc finger SWIM domain-containing protein 5 isoform X1. (1027 aa)    
Predicted Functional Partners:
BSL78_18091
Putative transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.567
BSL78_24816
Putative transcription elongation factor B polypeptide 2.
    
 0.517
BSL78_11280
Putative transcription elongation factor B polypeptide 2-like.
    
 0.517
BSL78_09004
Cullin-2; Belongs to the cullin family.
     
 0.507
Your Current Organism:
Apostichopus japonicus
NCBI taxonomy Id: 307972
Other names: A. japonicus, Japanese sea cucumber, Stichopus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.